| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10000268 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37683 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (76.36%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F004010 | Metagenome / Metatranscriptome | 457 | Y |
| F039527 | Metagenome / Metatranscriptome | 163 | N |
| F056556 | Metagenome | 137 | N |
| F068578 | Metagenome / Metatranscriptome | 124 | N |
| F078641 | Metagenome / Metatranscriptome | 116 | N |
| F083891 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000026815 | F083891 | GAGG | VSRAVECPHCRQEVPVALFASRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELQVASFRPIKLD |
| Ga0209088_1000026816 | F039527 | GAGG | MKYLKFWRQHDRTNPTHALRDPVHRVYVENVLEETMNNYDDREEGALTFEQMVPGKYYRYNRDYGICEIMESASNRPKVLRYLNRGGGLLGGNGDLFEIDMTDRLLAVLKERRDKQIEFIDEMRTW |
| Ga0209088_1000026825 | F004010 | AGGA | MPSGKNVSKNMRELMKDNKKKGKERGAGGKARSFEQMVAIALNAAGKSKNR |
| Ga0209088_1000026831 | F056556 | AGGAGG | MKRQIVTVSCQLPEWFEKHSLPRMEESSKRWDANLVVIKPEKPIGLLAKMSLVDAVQNADRTLFVDSDVLISRECVNPFETFPQGHFYACADAPHGDQLHWGRANEMILSQALLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSVRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP |
| Ga0209088_1000026835 | F068578 | GGA | MEAIDSLGTAVRELQEGLPVKDHTGPTIEDVATYASGVIRKIMNRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNVSSPDGLGETCIDHLERALVRAVFTLYKAKEGKIR |
| Ga0209088_1000026850 | F000635 | AGG | MTLTEIAQYAGEKIGKTDADTLTFLQKSASLNYRRVWNFAPWRESVTSSTYSVSTSTRTVTLGSLVENPLSVAYGDSELLAVDLQTIISQDADLLDNNRTGTPTQYYFTGRGTSGTAQIDLYPLLNTSSTTPLKVVEKNQCLTRSNYVVDFPPASNAITDELRLPHVQHVVLALTHADALERERQYAKAQAVVATANADLSAMAQYEMSQVGGIKVITPSSLGEFSILDISV |
| Ga0209088_1000026853 | F078641 | AGG | MSDDQVWSIEVKLARMEERQVQLYKMVETSLSKYADVVNRVSALEHFRTKALAIAGIIGLICSIAWDMLKNRLGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |