NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000264

Scaffold Ga0209088_10000264


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000264 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37988
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (87.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F008750Metagenome / Metatranscriptome328Y
F058795Metagenome134Y
F078404Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000026414F008750AGGAMKFFNLLREPFKKPTPLQVIAEALADAHLSKLEAEAGVEYAESIVAYNIARIERLNKRMEEYK
Ga0209088_1000026423F000961AGGMNAPEIDPVKYGVLWQKVQDYERRFDEMSAKIDKLETNIDKLVELANQGKGSFYAGMVMVSAVGSVIGYLSNWVGKS
Ga0209088_1000026455F058795GAGMIHPLFEAILRPYAPPTPEAIDAAMMADKMADGYNQRKIENAIKLEQQNANPEN
Ga0209088_1000026457F078404GGAGGMNRQHYKPEPAPRPWANALLAISIGLALAFILLEYL
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