| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10000250 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39317 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (74.58%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F003112 | Metagenome / Metatranscriptome | 506 | N |
| F004010 | Metagenome / Metatranscriptome | 457 | Y |
| F012569 | Metagenome / Metatranscriptome | 279 | N |
| F039527 | Metagenome / Metatranscriptome | 163 | N |
| F056556 | Metagenome | 137 | N |
| F068578 | Metagenome / Metatranscriptome | 124 | N |
| F078641 | Metagenome / Metatranscriptome | 116 | N |
| F083891 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000025015 | F068578 | AGGAGG | MADSTQSIMEAIDSLGTAVRELQEGLPVREHTEPTIEDVATHASTVIRKIMSRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDGSGETCIDHLERALVRAVFTLYKAKEGKIH |
| Ga0209088_1000025018 | F056556 | AGGAGG | MKRQIVTVSCQLPEWFEKHSLPRMEESSKRWDANLVVIKPENPIGLLAKMSLVDAVQNSDRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQLHWGRANEMILSQAMLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP |
| Ga0209088_100002502 | F002149 | AGAAG | MTAIEYIEASGVPEGMWHNLADWFRWFERQGMVGIVEDSDGIAGVALARCLKEGQKPDHYVHSEDGDNVFVDLTVSSKGAISLRCLLLLLWERFGIRKRITFNRSGKPRSYDYMTFMRKAFIGSKL |
| Ga0209088_1000025024 | F004010 | AGGA | MPLGKNVSKNMRELIKDNKKKGKERGAGGKARSFEQMVAIALRSAGKSKNR |
| Ga0209088_1000025031 | F039527 | GGA | MHRVYVENVLEETMNYYDDKEEGALTFEQIVPGKYYRYNRDYGICEIMESASNKPKILRYLNRDGGLLGGNGDLFEIDMTDRLLEVLKERRDKTIGFIDEMGTW |
| Ga0209088_1000025033 | F083891 | AGG | MGDTKLERMERMEGRMSKSIECPNCRCEVPVALFTSRIGRVRSEAKAKASIANGKKGGAPKGNRNWAGKELPVVGFSAQN |
| Ga0209088_1000025046 | F012569 | N/A | MSADTDRFGARNGFTVGTASVAGSGYWAIQMLADTTFSAISGNYDGTLTGITIGSGNIIYGEFNSFTAGTGRVIAYKG |
| Ga0209088_1000025050 | F003112 | N/A | MKRIATWITVLGLRLLLTAKDYACFKEALKCAEDNNRLARGTKYIGAVKHLLSVNRSIKRMVDDGRDRDEVVGAVVHLAVSLKYLESRNE |
| Ga0209088_1000025051 | F078641 | GGAG | MSEDQVWGIEVKLARMEERQVQLYQMVETSLSNYADVVNRVSALEHLRSRIFAIAGVAGLLFSVAWDLVKNRMNH |
| Ga0209088_1000025058 | F000635 | GAGG | MTLTEIAQYAGEKIGKTDSDTLNFLQKSASLNYRRVWNFAPWRESITNSTYSVSTGTRTVSLGSLVENPLSVAYGDSELMSVDLQTIVSQDADLLDSDRTGTPSQYYFKGRNTSGTAEIDLYPLLNTTSTTTLKVIEKVTCITRQNNIVDFPPSSAAITDELRLPHVQHVVLALTHADALERERQYAKAQAVVSSANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |