NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000042

Scaffold Ga0209088_10000042


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98873
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (46.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009072Metagenome / Metatranscriptome323Y
F010017Metagenome / Metatranscriptome309Y
F013889Metagenome / Metatranscriptome267Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000004210F085130N/AMTAYYFWFGIFIFVFYLVATDDSVAYAVTLVSKILRFQYEKQKWWLLHNPANPIVKHLMWRRSLRIAKELEKEFNK
Ga0209088_1000004288F010017N/AMNHRKHKQSENLKKKRMYIPDGYLKDPPDAKCPYCGESKKSCSHIDSLSRAWARDACKKKNEQIS
Ga0209088_1000004289F009072N/AMNKYNTEDYFSVRERRTGRKICDCGDFEDARMIMNLDTPNREIVKNKTLMSPVIDIEMPKALPTNEIAIDPKPYQEHRDAWMVEKINQLPQIKLPDRQQEPFHVRV
Ga0209088_100000429F013889N/AMSRTYRNTEGWHSGAFRYPHTENERKQLDGVLHDPELLELPISGLNHMKSREHELPSAWDDKVISAYYEV
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