NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1080569

Scaffold Ga0209296_1080569


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1080569 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F016528Metagenome / Metatranscriptome246N
F045700Metagenome / Metatranscriptome152Y
F075708Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10805691F075708N/ARNLKNLISDTTYDQDVYLDLAKEVLKNSDVSNMEDIIKGALIVTQDNGNPYTVIKRQANQLQGTNFNDILLTSLKMYNAKYNPNYMQQRSFGPEFAGIINKFTPRNIQDVVKVLSINPRAKDMVDMIQKYRRDLYESKKMSIKYRDFYKF
Ga0209296_10805692F016528AGGAMINNNELFAKVLAENPLPYRLGDKVNTNHGIGYISGYNFKDREKVWKFTIRPHGLENYYTDVETVYGKVE
Ga0209296_10805694F045700GGAMNIRPSQCFECDTGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCDAEIIDSKASQMIESNIEHNFPGHYDKWKTKNKPRL
Ga0209296_10805695F000962N/AMNIHVSDEIKAKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFSGQIPDWKLKKVT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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