NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1010572

Scaffold Ga0209296_1010572


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1010572 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5556
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F004132Metagenome / Metatranscriptome451Y
F006844Metagenome / Metatranscriptome363Y
F019826Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10105721F000684N/AGDLFTTSKTGVTGRIVKFSPINSKLTRVSLQLANGAQRLAMVSTTK
Ga0209296_101057210F019826N/AMGFMRRSIRLGISKEEKVASRIITLLSDFTLDLEAIGFYLSKGSPYIIYSRANEVLEAMQYNKEVDQLDRGVYYGNGR
Ga0209296_10105722F004132N/ALHFHDLDDIIVLTEKEPLMSEILTQEQLTVSYNPNLLVTYKYVPETYAAPESPTFMTDKVTDIEWQLHKSREYAARAAERRSDIAWLEDQIAEWYDPNYSKEDVLKALAEHFDINPTKQIEVQGTVSFSGTINVPVSELDDFDLSNVTIDVDLNSYEYDADLNVDEVSLEDHY
Ga0209296_10105728F006844GGAGLAKWEIEVIFEPTGDYMNFVYETDNEDEDTIFNEVANQLSIVPNLVEKNEEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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