NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1007746

Scaffold Ga0209296_1007746


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1007746 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6655
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F005177Metagenome / Metatranscriptome409Y
F013527Metagenome / Metatranscriptome270Y
F015208Metagenome / Metatranscriptome256Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100774614F013527AGGMKTFQFLTYIDVEAENYDEAIDVFQFQLKYGINKDNVYVADITDLTIESVEV
Ga0209296_100774615F015208N/AMYKITCTYDEATTPYVSLQFSDALQAFEEFAKFVDWGFADKYSTVNLSLPNGKMYTRIFYREGRKVITK
Ga0209296_100774616F017995GAGMKQYIEIIAAECDECGGAGFIFFGDEKNYDVETCDCVAEVADELTVDWVNN
Ga0209296_100774617F000447AGGMGYIEIFRLNEQGAGWVDLSEATPDELFNIELGLLNEGALFNKPEAD
Ga0209296_100774619F001562GGGGGMSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLEELEN
Ga0209296_10077464F005177AGGAMKNRYRIEIYDEVKANDLTLYSEQGVDKQYLTELVFSNMRRFNGNIRAFVYDTLKKKKTTALIIPMDVIPKRTEATKLM
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