Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1006519 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7343 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (96.15%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000652 | Metagenome / Metatranscriptome | 959 | Y |
F009334 | Metagenome / Metatranscriptome | 319 | Y |
F010227 | Metagenome / Metatranscriptome | 306 | Y |
F020008 | Metagenome / Metatranscriptome | 226 | Y |
F062427 | Metagenome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100651913 | F000652 | AGGA | MKTAMVTTILRQEIQVPDDWEREDVLDFLGEFQSFRTAFQGVSNEDQTARIVDLCVVEEEITELGDVAYDN |
Ga0209296_100651915 | F009334 | AGGAG | MYATVEGQQIKVGDYVCFKSDVEQCGKVVAIKKSYMGTALTLENESGFSGGYIGGQTRTVEEASDCWVE |
Ga0209296_100651920 | F010227 | AGGAG | MQATTFNVSDKLTLASTDTDEDSVSTTYNCNVEVQLAGDSIWDCELEAVTITSIHISETDWGDGDTSIHIAVCYSVDGFDDGEALEGSWRIYTDSGFEAAVSELLGTDVTFTEQGMQDDGYASMEL |
Ga0209296_100651921 | F062427 | AGGA | MKNTIKRINKAFSKLYAMGDSGLDYLDKHYAVDAALIQHFYDETLDTLTKAQLSELAEQLEEVASDAEFDLETI |
Ga0209296_100651922 | F020008 | AGGA | MGIYASTVNAFAESAARAKVYTMQNRLQSYGQTAQQLNVSTAKFRRDIEAKKVKFIAKLEKERVVKLQQELASLQAKHTQ |
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