NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1005758

Scaffold Ga0209296_1005758


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1005758 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7883
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F002052Metagenome / Metatranscriptome599Y
F021758Metagenome / Metatranscriptome217Y
F026201Metagenome / Metatranscriptome198Y
F034569Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100575812F026201AGGAGMQNIKQYITEAEDGYNLCITLDNEQCAGVAVESITMFISNVNEAEDGEDAMYFNGDLAVNYNIDALQNDETAQTMGTLLLRNIHSEDEVTAVMGQFYWEGAFTARLNAILAERGFTANTAHTSEWGMQDEGRASYDACELADEIRAIMQTATA
Ga0209296_100575820F034569N/AMNKTNELIQWAGTAFILAMYVISNFFPGLDDLRNAVALVGAGCFFAWSYRVANRQQMIINGVAIVLCVVGLLRVVG
Ga0209296_100575821F000354AGGAGMTKVNYDRFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHIMETEFDFEDVGSGEYEAFAAGVKYALTKMNIAFEAAALDLQVCEVDLVESMGYVMVRADDEPEDFVKRVLKKPVLMVESWID
Ga0209296_10057588F021758AGGAVDQGWSRQEGFGCRMKVIKLDRRYSGYGTWTHRTNGGYWQGEEARAKGLMAFYEMRCYMTQMNGPGCFIHEAWAIKKHGQAVPEWAWDTDGNVFFRDSALVNFTLAKDKWQ
Ga0209296_10057589F002052AGGAVRTYKFTFTIECAGDGSSDLARVEEMIDLSMQDLVFDDEFIAALDEKESVAIQVLRIG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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