| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1003003 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11679 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (70.83%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001834 | Metagenome / Metatranscriptome | 628 | Y |
| F002162 | Metagenome / Metatranscriptome | 588 | Y |
| F007469 | Metagenome / Metatranscriptome | 350 | Y |
| F013618 | Metagenome | 269 | N |
| F017290 | Metagenome / Metatranscriptome | 241 | N |
| F037698 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100300317 | F013618 | AGG | MTVFTPDWKLTINAVEYTNVAISDIAHQAGREDIYSQPNPSYMQIELVALNNENYNLEINDGITLQVKDSTNTYRTLFGGNITDITTEVATASSIAETFTYTILALGSLAKLPKVIYEGTLAQDDDGDQIYELLSELFLNNWNEVPAAETWSGYDPTITWANAENIGLGEIDRPGVYELENRTADPDTTYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLANNGYTEISANTAIGAGLKVLTRGADVRNEIILNYGNNYGSQKTAIDLTSIATFGYRGESLNTVLHDATDAQALADRFIALRSYPRALFDSITFPLTNSAIDDSDRDALLQIFVGQPMRITDLPVQIAPTEQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALAWDQVSASEAWNTLSAILTWENAIGAVA |
| Ga0209296_100300321 | F017290 | AGGAG | MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNDRQVYQTMDGEVYKTTNISATFQLDMLADWGKTSSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPSAGGSGVDAQTVSFTFTVSKGAVVETFS |
| Ga0209296_100300322 | F001834 | AGG | MPNQTILAQVRTPLATALSSVAGNVYGYVPETVIPPAVVVVPDSPYLEFETISKTNIRAKINFTISVAVAYNSNPASLDNIEQLIVSVLAVIPVGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTI |
| Ga0209296_10030033 | F037698 | N/A | MRVLDVRRSGVPYMCANHDEMTHNINWIYQNKLREQWLLDNPDAQYIGWMSI |
| Ga0209296_10030034 | F002162 | AGGA | MPNYEYECDGEGLSIVLDLPMEHEIPCCQVCGAKLRRVYSAVPAIFKGTGWAGKGG |
| Ga0209296_10030035 | F007469 | AGGAGG | MGELQIIDGSGLTATFTDDGVKVEPSTIKCDTCNDDRLLHEGDLLRCYVCHTINRIPYPVNRNFNA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |