NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001526

Scaffold Ga0209296_1001526


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001526 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17651
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F011648Metagenome / Metatranscriptome288Y
F024503Metagenome205N
F040482Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100152621F040482N/AMSWNLRLVNMSSPYEDYFEVREVYYDTMGKPIGHSKAAIGGEDRLEVDRYIELAKLALDKPILKFADNEDTSKDN
Ga0209296_100152623F011648AGGAGMSEQDQDFHNFQQHLERIFKDLEDGVFITADEIGDLRYACGLPSPIRNTHVNPVLRDVINDFSNIFGANK
Ga0209296_100152629F024503AGGAMKYLLLLTPFVLAACSSFEPPNVSLETDKQAFHMSRQQVILGITECEEAGTRPVVITAKRRINGIMSDVPVEVTCNPRYKLFY
Ga0209296_10015267F004517AGGAMEHMSRKYKKEDAMLRPEHESTLEKQQRLRLERRAALANKLKDLDKEVK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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