NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000738

Scaffold Ga0209296_1000738


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000738 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27829
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (33.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F013889Metagenome / Metatranscriptome267Y
F025022Metagenome / Metatranscriptome203Y
F072274Metagenome / Metatranscriptome121Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100073816F072274N/AMLMTTDGYISSDRMWAAVPWYSKRYVSIYNGEQICTHNSLETAKKFIQKETRRKND
Ga0209296_100073818F085130N/AMTSYYFWFGIFIFFGYLIVTDNSISYAFALVLNLIKFQYEKQKWWLLNNPRNIIVRWMMYRNSMRMAEELMKEFVEKEKK
Ga0209296_100073819F013889N/AMSRTNRNLDGMHRYALRFPHTFNEIKQLDGILHEEDLEGLPVSGLNHMKSREHNLPTAWDDRVVSGYYQEDYETDT
Ga0209296_100073831F000345GGAMTEPNEFGKAMQEWWDSDECKQIEKENEEAKQRAVGKYFMLSESDKLDMVQAICYIMCKAEKEGTSHRGLQDALGIYPTGFWVDHLMEVHNALWSYYHDKKQKEELEKDIKNLQDFMET
Ga0209296_100073837F025022GGAMELTIVAYKLEDGLWAFDHPYNNTVQELLLNGTEEAIDEHFYFGTGRHAVEKDQMEIILNTEEPDDYDTLLVKEVGDDDGTTYTDTTLCSPVWLCNWNQGYFGFVPEELYVKVRPINKGLESFVKNTGMRGFLTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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