NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209379_10194785

Scaffold Ga0209379_10194785


Overview

Basic Information
Taxon OID3300027758 Open in IMG/M
Scaffold IDGa0209379_10194785 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)700
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004850Metagenome / Metatranscriptome421Y
F066793Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209379_101947852F004850N/AMKQIIEYPNEIFEFEIYYGDIEEPLYLTNNKNYICDDMKDFMEELGIVMEEVIYKVQVI
Ga0209379_101947854F066793N/ACINHVLNYPGEANGVFMTLNKTQQDDVYELLNQIL

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