NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1118060

Scaffold Ga0209596_1118060


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1118060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1224
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006935Metagenome361Y
F040624Metagenome161N
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_11180601F047676N/AMEIIITLIVLIIVFGIGFLVGAKQGRNQLVNQIKKDGGYYDMEYTSSAYPILDPTSSINNDTMGTIGSKPKTQTDYQMEHKAEGETPAIDFMHNWIQEKSGKKQNPK
Ga0209596_11180602F040624N/AMKSEKVMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFERIEKQISKLKN
Ga0209596_11180604F006935N/AMDKRYAKQIIEWAEDAKQTLTIRKEIIIDESVTDEKLGNIIRMMYKAKVETQNEQIKHAKQKTEL
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