NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1060427

Scaffold Ga0209596_1060427


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1060427 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1931
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040102Metagenome162Y
F099275Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10604271F099275AGGAMFNMYMSIGPVNLQLETDERLSFDAIDSLLNRSAATTLTLFDHHLGSMIKYDNYDNDIDCDECNLIQGISEELD
Ga0209596_10604272F040102AGGMQCAVCKFNVESGQVCKRCYSSLKSALTELPELQSGAASFISPGRSGSGSPSTERSIGFNVNALDYSMGKELLGVLHKYEALIRRGRTLTPPALLKREATVDKEVAATVSFHLAHLEWTVQQDWLEDFAGQIKELHSKGMATNKKFIEQPRKIPCPTDECRAHIVIDIENLLAGVRCHKCRTSWTLYRLLALAMNNPNRTFWLDVDAICMWMNISKIDLNKIVRQHDIPMKNGLYDISAIAKARSLID

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