NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1051266

Scaffold Ga0209596_1051266


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1051266 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2155
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F004840Metagenome / Metatranscriptome421Y
F011299Metagenome / Metatranscriptome292Y
F013527Metagenome / Metatranscriptome270Y
F038205Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10512661F013527GAGMKNFEFLTYITVEAENYDEAIDVFQFQLKYGINKDNVYVADIKDLELSE
Ga0209596_10512662F001562GGAGMKSQFELDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLEELENE
Ga0209596_10512665F038205GGAMAKVKQLIETLAENCEKCGGAGFIFFGDENNFDCETCDCVEGENYNV
Ga0209596_10512666F004840GGAGMYKLTCAYDSNAPHWSAEYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYREGRKVVIK
Ga0209596_10512667F011299AGGMMTRKDYVAVAEILNYASDKTHPALFSKIVNDFAEMFAKDNERFDITRFHKASGYHVPNFTSR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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