NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209596_1020081

Scaffold Ga0209596_1020081


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1020081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4024
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F018537Metagenome234Y
F030760Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10200812F002092N/AMRTTNQKAIEYLKGNPIVANFINKLNIQRKDYYVKADMPSQYKELVVEVGQKYIRLWQGTGCWGFISRVDGDLKGSPIKKGDLLKCATWKAPAKHARGNIIDGTARYGVYGPDYL
Ga0209596_10200813F030760N/AMNYKTLHDIKIVSQSGDKITIKGLSYSVIMTIAKSNTELQSITITKQYDKKIK
Ga0209596_10200814F018537N/AMASNRTPNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKGWYKTGQNDVPWRVAQYIDIYLHHANPNRMRIWKKQGMERKNLQLNDTNVMIARTLGSMGCSLADGVKHSEQSKGIPALQAIKSLQHQTQMQDPKFRRKEMKRKYMNKAYHLQKGDWGFIAQSLLDYTETSGKLTFTQLKTYYDVILRGKPKMENGGSFIHHLQSLVSPANALGRRCKRYLHKELVTGKYRIATM
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.