NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1009945

Scaffold Ga0209596_1009945


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1009945 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6384
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063654Metagenome / Metatranscriptome129N
F066734Metagenome126Y
F078664Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10099455F078664AGGCGGVATIAETWVKAGGSESGLHELMAIARRNCPNGRSYATSTMAVQSCGCPVHAYVRSEPGLYRLAHTERNRDAYVSNEWDLWSKEDDERVSPD
Ga0209596_10099458F066734GGAGMMRKRDLVQDALWIAFTASLAWMRSAGRHWRRIVAVTTMGIAIARAVIWVAKAVASAGTVDGLLNLMGLGEYVRPFEQAVDNVIGTVVAIIMTVTPNG
Ga0209596_10099459F063654GGAMEARTTKVRATLAPRMDPTRYTHSYVVNAVPQYRPFTTVKGDHSVQHWGLISWDQQDRERRNEAGGQIAYLTERDGVYTISVVGPLTVRDWSAAKLSKARAHNGEWRDVWTGAASDGVTLMEAVARLRALRDAMQEDADAYRRGL
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