| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1005929 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8933 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (87.10%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F004840 | Metagenome / Metatranscriptome | 421 | Y |
| F007263 | Metagenome / Metatranscriptome | 354 | Y |
| F013527 | Metagenome / Metatranscriptome | 270 | Y |
| F017829 | Metagenome / Metatranscriptome | 238 | Y |
| F019325 | Metagenome / Metatranscriptome | 230 | Y |
| F020168 | Metagenome / Metatranscriptome | 225 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100592912 | F007263 | GGCGG | MIDKDYLDETDFYLIKDEQHFCCDESQFVHVCKEHGEQMGCYYCAFDYTQNCEEQH |
| Ga0209596_100592914 | F004840 | AGAAGG | MYKITCAYDSEPIHYIREYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTRIFYREGRKVLTV |
| Ga0209596_100592915 | F013527 | AGG | MEHYEFNTFITVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESAEV |
| Ga0209596_100592918 | F020168 | N/A | MTDLFGSVIAIILITFLCSPIALAVYMWRGSKIDNDNDGKDDLPYRWNK |
| Ga0209596_10059292 | F019325 | AGGAG | MTQLNETLLSTIVHEYHNGGVKSSHGLSAYDRKAMVKYLISSPACYCINCVCEVTHTA |
| Ga0209596_100592924 | F017829 | AGGA | MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFSKNKISNSI |
| Ga0209596_100592927 | F003422 | N/A | MMITYSKYTWVCTGDCDALIEYTFKDGFGWPNGVMQLTCPCNSTCILLSVDDATIAPTTTEEGQMETTMNNLPLSDAEKYNPDLLVTYKVIRGYSDAEYTTDKVRNIEYELHNGRTNSKLVQVLHSKIDSVKDIITESYADSNDQETLQAIAEALDIQLTREVEWSATIEVSGTLTIDLLESTVDDVEQEVYDNLYVDSQNGQIEIVDQEVTNVREN |
| Ga0209596_100592929 | F001043 | AGGAG | VSDYKDGFQDGYKFAREELMEKLSEIDIADIDSWILDRLSEMIEGGNL |
| Ga0209596_100592931 | F001125 | GGCGG | MGDRTNFGFRDSKENIVFLYGHWAGYRMLENLADAVSAAEPRWSDEAYATRIAISHLIKDEWASETGWGIYVNQLGDNEHKVPIIDWKNKTFTLMEEDLETVVFSTSLNAFVSKYCSQPSMV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |