Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1005645 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1005645 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9188
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9188

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F007799	Metagenome	344	N
F016529	Metagenome	246	Y
F044361	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100564512	F044361	N/A	MTQWAPDWKVLIAGIEYTDVVLANLSISSGRSNIYTQAQAGYCTLNLINLNLGAITAEINDAVSIQVKDTSGAYVPIFGGSIVDVAVTVSQTGSVAITQEVTITALGALSRLQKALTLGVLAKDFDGDQIYTILEDLLVNNWSEVPAALTWATYTPATQTWADAENTGLGEIDRPGNYELAARGSSQTVTWNLVADLATSGLGYLYENAQGQISYADSTHRSTYLATNGYTDLDANQALGRGIRIQTKAGDIRNDVSIVWKSGTETATDAASIALYGKLAQQITTSLEHAADASDQADFYLTLRAQPQAFLESITFALTNPEVDDADRDALIKVFMGQPISLSNLPVNMQSGNFLGFVEGWRFQASFNELSITLIVSPLPFSLQAMEWQDVSVAETFNTLSPTLDYADALVVN
Ga0209596_10056453	F016529	AGGAG	MPLLRFDCSICKKLFGDARQEHMITKGKELTEHEWFAQCAGCGTFSVKLVNDELVAGLE
Ga0209596_10056456	F007799	N/A	MDVNLEKGYVLVECRIYRNYEDQEPAGIDYAFGNVNTYNIQMKKWFIEDTCTSAIGRCAGLVLGTDKRPTVQNMQQVEQIDSKIVQDSAVAYDYWNTKHGNVPSFKTREEAEQAGISTLGTALDEIKGTLGGVQVAAAPICAHGHMIWKEGTSAKTGKGWGGYMCVEKVKAKQCAPAWYVLTSDGQWKPQV
Ga0209596_10056457	F002433	N/A	VSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEARLDQLLLEIALNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1005645

Overview

Ecosystem & Geography

Associated Families

Sequences