| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1002791 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14254 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (25.93%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F005588 | Metagenome / Metatranscriptome | 395 | Y |
| F014261 | Metagenome | 264 | Y |
| F021107 | Metagenome / Metatranscriptome | 220 | Y |
| F053888 | Metagenome | 140 | Y |
| F092032 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100279113 | F021107 | N/A | MITFLIGLLIGFIGGFIGGIKNAKSAKVEKAVDILKALKGK |
| Ga0209596_100279123 | F092032 | AGG | MSAVNTGLVCLYGIGAGQQASLYVQSYSVSSGFNNTGMVVDETGRTITGRYDDRRSEISVEGVAHASSIPALGSTLSFTAKTTSAYPGGAASVSFSGVITKVDDRGSSKGFVTVSLTAESFEEITY |
| Ga0209596_100279126 | F001298 | AGG | MSLFAEFLPDAKEMVADFPVAGSANSGAITFACLISDPAMQTVLESGGYMERTQYSVRLPAATASWTLPDGSTGASTAIISGGLPIASLGQGKKIVVGGKTVRITTQTYKPASAWLTLIVIDDNQ |
| Ga0209596_10027913 | F000957 | N/A | MSNFQHLEGMRNLLTEIYEVNERIMTGDIISAKAAIASTNVKKILTHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV |
| Ga0209596_10027914 | F005588 | N/A | MPNPLAHSPDMITTIRPNKMPAFWWVCPWAYARTLHMSANAVKAYADQADRTLEMYVRIVEEKNAEIRTLKERIADQNDAIIRGTAINPDAHPHE |
| Ga0209596_10027916 | F053888 | N/A | MNQSSVSFIKGLDGRVLTLARPVLPHAARRLVSVIPQLTALNTAGKSQADAAEAMGVSVGCIRNWITLAGIPWSNLNKRGPYKRIK |
| Ga0209596_10027917 | F014261 | N/A | MKTLIALIIFGWLAVVTFCGPELARAINGPEPVKAKTHRIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |