| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1002495 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15200 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (50.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F001725 | Metagenome / Metatranscriptome | 645 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F005588 | Metagenome / Metatranscriptome | 395 | Y |
| F010765 | Metagenome / Metatranscriptome | 299 | Y |
| F019449 | Metagenome / Metatranscriptome | 229 | Y |
| F021107 | Metagenome / Metatranscriptome | 220 | Y |
| F029754 | Metagenome / Metatranscriptome | 187 | N |
| F074555 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_10024951 | F001298 | N/A | GSFFVPPSKAGKVMSLYSEFLADAKEMIADFGVSGSANSGAITFSCLISDPAVMTVLESGGYCERTQYSVRLPAVTASWSLPDGSIGASAALLSGGVPIASLGQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ |
| Ga0209596_100249511 | F029754 | AGTAG | MSCNTVTFKRGTNFGSSTVFAPEAPPAIQTLSGVTVTSTIVDADRNEYDLTVVVAGDFLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDTMRLDIIGQVTV |
| Ga0209596_100249514 | F021107 | N/A | MITLLLIVVGFAGGFYAGVKNAKSAKVEKAVDILKALKGK |
| Ga0209596_100249517 | F019449 | N/A | MTTETFTTIVVPGIASAAYLSASIACFIAHRPALAVMWLCYSIANVCLLSTVLRK |
| Ga0209596_100249518 | F010765 | N/A | MSPLSSPPQPDDMPVALRDLGFGILIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKGMKGKTPTKGD |
| Ga0209596_100249521 | F005588 | N/A | MPDPLAHSPDMITAIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDLQRRTIAKQAADIKLLQARVRDQDDAIIKGTAITPDATPYRDETIHE |
| Ga0209596_100249522 | F000957 | GAG | MSNFQHLEGMRNLLAEIYEVNERIMTGDICSAKSAIASINVKKILTHYHEALHEDGAVKVSLQAYVAAGGWVGVQYSYELDGFEVAGSQVPRRV |
| Ga0209596_100249529 | F074555 | N/A | MSQPDPFAFFNDAIKAAHTQNELLAANARIKQLEERLEGMREAGDAIWYCVRHAKRVDPAELIEAIEDWQEARNHG |
| Ga0209596_100249531 | F002038 | N/A | MTTTPAGIERIARTVQGQYALLLLLDGYPYVEMTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELAFNR |
| Ga0209596_10024954 | F001725 | N/A | MASISNGVTCLYGVAGSISNLFVQSYSLSSSFNAEATVVNEDGLTKTHRLDDRKSEITIEGICKTSTMPLLGVALSFTLNAQTAYPAGSASVSFAGTVTKIDEKGSNKGFTAVTVTAIDYEGITPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |