NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000542

Scaffold Ga0209596_1000542


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000542 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35013
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (62.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013889Metagenome / Metatranscriptome267Y
F072274Metagenome / Metatranscriptome121Y
F080901Metagenome / Metatranscriptome114Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100054218F072274N/AMNTDGYISSDGMWAAVPWYGKKYISIYNGEQICVHHSLETAKKFIQKETRKQ
Ga0209596_100054220F085130GGAMTSYYFWFGIFMFVGYLIVTDISVAYVFTLVLNLIRFQYEKQKWWFLNNPRNPVVKWFMWRRALRIAKELEKEFKK
Ga0209596_100054221F013889N/AMSRTNRNLEGMHRGALRFPHTFNEIRQLDGILHEEDLEGLPVSKVNHMKSREHNLPTAWDDRVVSGYYQEDYETDT
Ga0209596_100054232F080901GGAGMTEEATKPKSLGTSLEQWWDSEACKKIQETSVETVQRAIGKYHMLSSEDKYDMVQAICYIMCEAEKKGVSHRGLMNELGIYPEGFWITELMDVHNSLWSYYHDKKQKEELERDLKTLQDLTET
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