NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000346

Scaffold Ga0209596_1000346


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000346 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43297
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (79.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003640Metagenome / Metatranscriptome475Y
F007581Metagenome348Y
F024264Metagenome / Metatranscriptome206Y
F095136Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100034617F095136AGGMSEQLMQKLKESMNALDAICEIYVPDDESHENDAIAGYAMNVLETLKKEIELYKNKPLPEDDVWELVEDLNLHDPMYPLHFARAIERKHGIGDSNG
Ga0209596_100034638F003640GAGMALALVYDPRFHTFNSWASLMVEAYSGQQLQIPGDEDTWKDWAVGLKGIDTFTNEGIPGPYIYENWQDWAEAIVNAVNQRTDNDQAA
Ga0209596_100034644F007581N/AMEKLASMLFPVIVSAIAWLLTSMASIQSDLIAIKSKMPNLITEQGVPTDSPISVEARAKLKEELRAQMGELNVRIRILEEHDMQRKGK
Ga0209596_100034655F024264AGGAMSTLTNVFAVHEDATGTMYAGATNLAGYQLASGGTAGEIVFRDGGSGGTVLLRVNITTNTAVISTLIPGNGIRFNTDIHVTLPASAAVTIFCG
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