| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1000132 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 64988 |
| Total Scaffold Genes | 105 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 90 (85.71%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006979 | Metagenome / Metatranscriptome | 360 | Y |
| F008806 | Metagenome | 327 | Y |
| F009741 | Metagenome / Metatranscriptome | 313 | Y |
| F010448 | Metagenome / Metatranscriptome | 303 | Y |
| F014843 | Metagenome / Metatranscriptome | 259 | Y |
| F019092 | Metagenome / Metatranscriptome | 231 | Y |
| F025484 | Metagenome / Metatranscriptome | 201 | Y |
| F035737 | Metagenome / Metatranscriptome | 171 | Y |
| F055682 | Metagenome / Metatranscriptome | 138 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100013224 | F006979 | AGGCGG | MAKTIKVAGEKHTIKKNKRGEVIVDHAGNKGKYDKINLTKKAGSKTIAQGVKATKDWHKNNG |
| Ga0209596_100013230 | F008806 | GGA | MSFLLDEDEALRNLLKDMTVTDQKSVTEEGATRNVGVWFGQPDQEIRNQSYPYITIDMIDLSEDIQRAMRGRVKPSYLTNPTDQVEGTQSVQGVSYDDEIHDWDINYPIPVNIDYQITTYARQPRHDRQILAQLLYTKIPLRFAVLNTGPNTSAGTTRRLDVLDISKRDITEQGKRLFVNAITVRISSEIAPETYNQLYKTLELNVTGTTGTQVIGRGQFTTIDTYTQSAP |
| Ga0209596_100013249 | F055682 | N/A | MAGCTRLKTGNQGTTIYNIHELSSLKKHWLLKNSNIPRRFIGLDTKDIIDRAGSIPQEVTTWIDDCVNGHVIKQVGNIGINGVGLLFDGGPGIGKTTHAVVAAMEFLRRLPDNDVEAAKVLGMNSADYGLNARPIYYMTYPEFLSRKKATFDADLEDKREMNYIVDGFHGRSKFDWLNVRVLVIDDLGKEYGSKYDDTSFDEILRLRYDKALPTIVTTNVRLEDWEAQYKEAMASFANEAFVRVPIVGADQRSAL |
| Ga0209596_100013251 | F010448 | GAG | MKNGDISNVSSPQVVCVTDVVIGLVEEETKRLLSKKTKTKLGEINLQNANKLWILSNNYGISLELAGYGDLGWTEELLEEAFDTLEQEVVNPFNYWHLYADVGELVRKLPYRANLRGIVDVPGRVAMYGSAGVEIDNL |
| Ga0209596_100013262 | F035737 | GGAG | MSKSFNVNDQAWAHDLEKGVEAYTDMLFEAVWDANDVEIVETLSGEPFCGCSPCFWREALFYIVPKIIEGYEEGKIELED |
| Ga0209596_100013276 | F009741 | GAGG | MTQPVDGVYDHTKPWRAPLKPDLVAKRYQYNGPWASNMERLTQQALMVMNIPGKDIQEMVRPPLPQIRLFPDRFGYGDRSQPGIDDIVSVDRNYVEPRVSWYSGGVSGFQAASRNGLESN |
| Ga0209596_100013278 | F025484 | GAGG | MDDGDGMITMELQARQIADNATKYNGSTPCPTCGVVMNPVEFMANRGHCLSCVTQRNAKRVKGKMA |
| Ga0209596_100013285 | F019092 | AGGAG | MSNIPLLGQKESPANEPMFRLLHCLVCGTLDELPPYDGDPELDHLLAIACEPHVFPSGEPHKGKLFVLPIRAWAKLESKKEIIRQIKDGGSKGLAEIDDSFYDSRSTFLEGAMECYGRHNKPKDGCVDWHSKEKLLIPKTVKERKAEGMARYQDEAGPKTYLCDFCPVSVAVNHRKQKLLGI |
| Ga0209596_100013288 | F014843 | AGGA | LNILVSLDGVLSSDSGDPIRAGVMLYYALNINNRVAIMTSRKEEDAKHWLNSHGIINYDDLIDYSFNLEGEDLKKRQFVLSRSRAPIEMYVDSDPAMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRQWDQIEESINRVNVARSEAAAHPKQLEFWDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |