NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10010791

Scaffold Ga0209192_10010791


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10010791 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4991
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014556Metagenome / Metatranscriptome262Y
F038091Metagenome166N
F078575Metagenome / Metatranscriptome116Y
F097120Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1001079111F097120AGGAGGMKWILLATVLDWQPVYDDKKTCELAAAELKKVYYQEVAACIPKPSSTAANDQVNNMFDQMLGMIKELQKIEQKELDSSSK
Ga0209192_1001079113F038091AGGMQNITSTNTLIVTNPIMSPLFIAQLITVASYNKLSAQTKADISVVAYSAAAYLKAMRTSVTAQANVNVVYNVTQNLTYSVAA
Ga0209192_100107918F078575AGGMTTLNVHFVNRGYGTDEGFKKVELLGQSICEHSGKPVAEIRSPFGLGGSLVAEYAGQYEGWVCDLD
Ga0209192_100107919F014556AGGMKTSIYEATAGQKQMAVIGRAMCDMSEYANCKGMKEEGFKLLNDLSHVGSMLTKVGNTFGPKIDKDFTAEDMDLITRFMKKEIDIPQMV
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