| Basic Information | |
|---|---|
| Taxon OID | 3300027752 Open in IMG/M |
| Scaffold ID | Ga0209192_10002080 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14932 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023957 | Metagenome / Metatranscriptome | 208 | Y |
| F029485 | Metagenome / Metatranscriptome | 188 | Y |
| F033111 | Metagenome / Metatranscriptome | 178 | N |
| F048576 | Metagenome / Metatranscriptome | 148 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209192_1000208018 | F029485 | GGAG | MDSYWEWNKENFPWHYDPSSKQSDVQYVGQYVSDDMDRYIEEAIGNFVPEDYYNEVSFKGKPYNPEAAEIMEGYHNDLTRAGFNEHNTGGRQTRNLPNFFNVLAEASGLWNPQIMMLEQPPGKFIPWHRDSYNNYRRNFAKVGDDTEVIRYLVQLNDWQWGHYVSVGNDVIHQYKKGDIHCWPEGIYHSTANAGYWPRYSLTITGVVTPSALHLRDAKQVKI |
| Ga0209192_1000208020 | F048576 | GGAG | MTVEAYIPKHKYIATTLQSSNIDMDLSTAKVLELYGNAGTLLNDPENEVLPENYTVFENDPEALAQGIEDFPDSDFREWNQHNQMNNPGGIIDAPLPFVGEEKFDLIISYMKTANVDPDILEDMLTTCYEHLNPGGVIMFGVFIREVSLNYFVVRRTHEYGMLDEALIETTETSDYFCLINNDDIRPHIGRVPTEGDDGVLEATHYTWFWNSDYMDGYLKELFPDSTVGTRRLPPMWSIQTPFTVQKNS |
| Ga0209192_100020804 | F033111 | GGA | MSDRKEIPYYFEIPELNMPSFDVKEYFVSDEERTIARTDVKTSDRLTGNSRTNTANWYQSFIKVEENSSQDKRDFNQVNLYEEANFDLTKLLKEWLHDHINLKFTSVLMLRTPANTNSRWHCEGPVFHTRQCALNFPVSGDFTKSEAQWATFPRFKDIDPRENEKHGYVTQTDMKDTEMLCRWDNQTVPGFQNTMIMHRGYNEHCDTDRVILSAAVEDTADINVVYKKYIAGNLFK |
| Ga0209192_100020805 | F023957 | AGGAG | VSNKTPYEIRLELIQEARLILQAKAGKPEYMPSTEEVISEAEKLNQFISRKPDVR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |