NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1030186

Scaffold Ga0209084_1030186


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1030186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2795
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F025283Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_10301861F025283N/AMLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIPVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCL
Ga0209084_10301863F006264N/AMEDLTSLFRQKLPAQAEVCARKALERLQKDLQHEHLLSPQDVYYLASAAQILLDIRDLYGKKXI
Ga0209084_10301864F001059AGGMAYDIEALKADLPTAKELAQFVYDKTQISLDFVGKPKEDQYQVAKNALEGKKIPSDYMTELNPYLDKKELIPEDAIKQMPPRSADLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYENGAITYQITGPLEKTAIGERINKFGQKQPEKYSWLDPRTPEIMMRRADGTYTEKGRGLYAYCIGEKGGGIWPLIDRDLTNFTQKNVTDPWA
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Institute for Fundamental Biomedical Research
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