NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1018247

Scaffold Ga0209084_1018247


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1018247 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3872
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008554Metagenome331Y
F017266Metagenome241Y
F034176Metagenome / Metatranscriptome175Y
F063289Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_101824711F008554GAGGMGQLYEYDDLEQEIITGAGNAMAREIDREVLWGMLQGIGWTRVMLPTLVDNHHAVDITHWLALNTKKAHERSGRDFLFESAKDAQWFVLRWGTE
Ga0209084_101824712F034176AGGTGGMRHNYTKQRNSDEDFECFISKFECRIEDSREYNQYVRPTPYYRDVCSSEDWRMETKILPMKAIHLTSDNLARLIAEQENIQHLMKDAEYGKKCWDHERRDSIVRNKNPAVEKAYQRYMMLLELARN
Ga0209084_101824715F017266N/AKNGTDSTNNTQTVTLQARRMGKSYVNSLLQNWYTNMGITHAPVIKWQRLPGLKLQAYTDDVAPRGFERGLNESDMDPVQAWCEGCGCGTRMSFNVWKFKSEKHVTMFLIRWAS
Ga0209084_10182479F063289N/AMAVTQEREAMRVAMQLKRDGWVHDMYDLSAPECHKRAGWCTETFGPMYNDMIMAGKWYGAELPFQSGGVTPNRQYVFMFRDDKLYTMYKMMWPE
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