NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1012427

Scaffold Ga0209084_1012427


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1012427 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5016
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F006659Metagenome / Metatranscriptome367Y
F010765Metagenome / Metatranscriptome299Y
F019449Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_10124271F019449N/AIVVPGIASAAYLSASIACFCAHRPALAVMWLCYSIANVCLLSTVLRK
Ga0209084_101242712F006659N/AMKKPTSKTPAEYRIIADSSYIVLPDNKVARLLTPTVRNGVTYFNLFLPGYTRMSLEDIEATLKAGTVTKAE
Ga0209084_10124272F010765N/AMSAALPTPPTPSEIPQEIQDGILGIGIGAISWLVRYACSTERHSLGYILRRTATAGLTSLLVGVATKGYFNSEAIGFASAGCAGYASPELVDLLIAKIKSFKKAK
Ga0209084_10124279F000957AGGAGMSTFRHSDGMLALLSELYEINERVMCGDIVSAKAAIASTRMKKCLNHYHEAISEDGGTKVWLRVYVAAGGWVGINYSYELDGMKIEGSQTPRRV
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