| Basic Information | |
|---|---|
| Taxon OID | 3300027749 Open in IMG/M |
| Scaffold ID | Ga0209084_1010530 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5618 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023292 | Metagenome | 210 | Y |
| F051701 | Metagenome | 143 | Y |
| F061801 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209084_10105303 | F051701 | AGGAG | MQVQIELNDDQADEVLIESLKSGYQVNLNFPDEPNFYEISQAFRTLLAYYMGDKECAKYLHAMAKVRKNYNAKRLVEANNGL |
| Ga0209084_10105307 | F023292 | N/A | MNIDQVKEYVTTQLKSYRVKDILDNFSDKEWLSMYKQITQTKPWEVQRNLIDFAVMELDKFRYNLYCERHYEDLLIDKACLECLKCEEVFCAERKYYVRRPQS |
| Ga0209084_10105308 | F061801 | GGAG | MKIKGIYKGYDREVYLSEYATIPKEHYRRLRFCAVVSVGINIFLLLVMVIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |