| Basic Information | |
|---|---|
| Taxon OID | 3300027749 Open in IMG/M |
| Scaffold ID | Ga0209084_1000810 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28418 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (82.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F011148 | Metagenome / Metatranscriptome | 294 | Y |
| F058557 | Metagenome / Metatranscriptome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209084_100081018 | F000934 | AGG | MPLNTILAVSESVGINDQRFVGQMVSRNQRISTSEILTVQPFGFEMKPMQYLQYSTNRTLLSALREADKATEQYLNFGSTNWVNYIAYQGGLTSAQIGSCLWQTSSANKTLVLGALPSVASTTYIVRTGDFCQVGRYSYIATADVQRGSGTTVNIPVHRNLIATLTSTVQCVIGQYGTTIALGSGTFTGVTFCVILRDYPTYTLVPMTNDSFIAWTGTFKAFEAVL |
| Ga0209084_100081019 | F002085 | GAGG | MQVIAPVVGTNNIRLADFIRVTTIVAGVTTIYQFSTCPYVITVSAVSATPFNGLSQLVKVGDVQRDIKSTANETSVTLIGLDTALLGWVLGQNLKGSKIEMWHGFFDTNNALITTGGTGGLYKFFTGYINAFSISEQWMEEARQFIGTISVSAASIQIILQNRTAGRYTNDNAWQFFNAGDTSMNRVNFVETINYQFGKDAPAGS |
| Ga0209084_100081024 | F000324 | AGG | MTTSIPTAHTLVYDGCQTNVFHASIGEGLPHHQHTFSHATICMAGSIVVRKEGKELVMTKVTQPVNLTANEWHEIEALENDTVFVNIFSEGKY |
| Ga0209084_100081025 | F011148 | GGA | MAVFSKNSITQVSGFDNPCITGELVYQQKTFWNLTLTSEDGVTPVNLTGATVDAQIIRRTLTNVQDTRYGLSFDIGDYTPTPTAIPLTIANRNDTAGSFTLVIDDTSWIAVASDPEMAISSVNGAGFSGRIKISFTATGSTPAEDNIIFLLFIVRSDAIIKV |
| Ga0209084_10008109 | F058557 | N/A | MAISRYEQVSVNNLTFGVNAFGEYTTTTVVWFLGRPLVAEVRNSVAITERYRIYSDLITFKFNYTPNMRMIVDDQNKYSITYRGNEWRITDAIENNDKMSVMLMCYRSDPETKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |