Scaffold Ga0209084

Basic Information
Taxon OID	3300027749 Open in IMG/M
Scaffold ID	Ga0209084_1000674 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027749 Open in IMG/M

Scaffold ID

Ga0209084_1000674 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31692
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (84.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

31692

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (84.62%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100067415	F005087	GAGG	MSLFIQSANALVSRVAQWVGSIPSALSITATSYASSTGIITVSADPRSLIYVGDFISNGVSNYTLVLATSSTTITVSDPEAVWSSVTYPGATILKMPTQSSLEIQACIQLAELKMRVIELPGLRTNPYDSAAPTTLVTDSNGMAPIPADMNWPILFFQETPAPSVGSTSSYGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGPNYVFTPNPGASVTIKAYYQRTFPFLFSPTTDTANPIVQNNAALASFPEGYMYGTLWAFYDKNKNNEEAQKWDGRFEDAYGKIEDQNFKDKWRGGDQHLTSEFQPRNPRYSFK
Ga0209084_100067421	F012214	GAGG	MTDYTRLRTPFLNMSFTPDVPSNALSANEYNSGLNVEADVRGIKKVSGEQTILSAVPGNTIFIEGNFRTEATWVYIVATREGKWYQVTALGITNITPGYGANPSAALSGYNDDLNITTSWVGGVFFINDTLRPPMYYRPTDTEIRLYDSSPDNYVWNYGTGVLATRAGFVRNFCSPNVGNILIAGNITQDLNTSVTVNYPTTVRWSQAFANTGVPATWEPTITNIANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPIAYQSSTAPIFGVRLFNQGRGLLNNNCWANTDQNVYGIDSRDIWVFDGSNFSSLGNQKVRNYFFTNLNPTYQDRLFVVNNTQKYQIEIYYPDLTSTGWCNKMLSWRYDLNVWNAPKDVQGACNACEAPVYSSGFQYASRCVAYGRGGVSSAQLVQTGQGNSFSGTAISTLFERNNVVLQTEKGPVPYSSKVYIHRALPEIAGTGTVNITLGGANSTAQTPVYGQTGNVAIVTDNPWVTTQQNSVRTVSIKVESNDAIYAWNLTAMNWQASVVEDAF
Ga0209084_10006749	F004695	AGGA	MLDKQNVIVEGIESPSGNKDLINKVAHEIYVKMVDYLRLTQSKNTYNRFSDYHYLNIPISNSTEPIRGIDYIHPVVAPGVDYATAIITKCLMPNGKVNFEFERFTELDSVQSNQATEMVKYMINSKNDAYQVIRDWAQDACLHKNGIVMVSPNRRPITQYKEVEGTRDQLRSFEIMAGEKGLTSKRQNMRKIDVDLQGAMQETMAAAQQGEEPNPSDIGDTLNSNVIYRAQYKLTGYQTEVKIKHVAQHYFVCNPTISTIQEQDFCGFYDPMTIHEAKEQFPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWIRRDIDNDGQEELIECCFSGSYVIYAKEVEFIPLANMCPKPIVGNFFGYSLAERLVPMQEYATAIARAEMAFAMQSSTPRIGVNPEFVDAEEIQRGVSAMFILDRKFDPAKHVYEFEAMQGNLAYVQSAMQRFDADKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDMIYLVWKTLIQYEDDYNIQQLAGVVSNGKPFMDALSMKNFEFIDRKLINIDLALGFLSEENRLTRQQLIVQCQTAFAQAMMQLDPNVPELFAKVRRPYEDTLRVLNVKDVDAYLPTIEEAAKISQAKAQQGPSMDEQEKQSKMELNKASGAEKMANVDLIKMKTQEIPISLGFEAQAAKEHKLNAVEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209084_1000674

Overview

Ecosystem & Geography

Associated Families

Sequences