NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1093074

Scaffold Ga0209689_1093074


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1093074 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1571
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017977Metagenome237Y
F019980Metagenome226N

Sequences

Protein IDFamilyRBSSequence
Ga0209689_10930741F019980N/AVAIWRDAAILLAYVHNLGDGATAAAGTDSVDRGGPGGYASRVKRLGLVRIRVCSRCGRGGAELRGEDGERLVVPLDAVRARQLANAGREEDVRSFTDLVLEQLAAAGVAAREVVLDVADGRLCALLSFVRTGETDVVGCTAEEGVALALRGGLHLYATDEALAHTAVDQPKAARGPDTVH
Ga0209689_10930742F017977AGGAGMRHPGWVALLLVMGACSRPVAPPPPDMVRTVAVLAPANRTGDPLLVAGTSFFEKYALKSDRVTVPDVLASEARVQLAHRGFTVVSAAEVESATQGRAPGSPEAAAEIASRAKLAGLALFLDIRRWEPDAPTHPAFVLVGITATLVDPASGRVVWSVERPTAPIATPGEVALGPAYVTAARKVVEELLAPLGPERPPAS
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