| Basic Information | |
|---|---|
| Taxon OID | 3300027741 Open in IMG/M |
| Scaffold ID | Ga0209085_1023800 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2934 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006060 | Metagenome / Metatranscriptome | 382 | Y |
| F068426 | Metagenome | 124 | Y |
| F083677 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209085_10238003 | F068426 | GGAG | MSKWDFVVSELKSLQQGFEDHQAITELFVEQKLLCGYKIVDKKVYKA |
| Ga0209085_10238005 | F006060 | AGGAG | MLKFEGIAKVGDIIRAYDFRPMAGRDDAFIEGVVIDDNNNEQGFKAFKVKVTADKFLKYETKATKNNRIGLDIFVPHETGFMEFDFRVINLSKV |
| Ga0209085_10238009 | F083677 | GAG | MSHHLDNFTVDELQSYFSDFHKDYYGFRPRFATPEQWQNRDWLVEHINAIHDAMDELKKTPEGREQLRAEGWVIDEPYIDIED |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |