| Basic Information | |
|---|---|
| Taxon OID | 3300027741 Open in IMG/M |
| Scaffold ID | Ga0209085_1009447 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4931 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039993 | Metagenome / Metatranscriptome | 162 | Y |
| F039994 | Metagenome | 162 | N |
| F057984 | Metagenome / Metatranscriptome | 135 | N |
| F091592 | Metagenome | 107 | N |
| F098923 | Metagenome | 103 | N |
| F102824 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209085_100944710 | F057984 | AGGA | MDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFNKAIKRFIETKGKKCTKKSSSKKRSRR |
| Ga0209085_100944714 | F098923 | N/A | MYYEEIDRRHVKALENILAEGKCEPGRLIGEDAGHLAYIMNQMFYDKFHGHGWELDLLTGRFVRTTGE |
| Ga0209085_10094473 | F039994 | GGA | MDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVARALFAWMQLKKGLPRL |
| Ga0209085_10094475 | F039993 | N/A | MKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSNLDDKGVIWKDVK |
| Ga0209085_10094477 | F102824 | GGA | MTSVRVQREDEKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGKAQDAADLWNAYALWCKERSGKRKRR |
| Ga0209085_10094478 | F091592 | GGA | MISAQFTRGDQDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKSQIGKLSDCNCYRDIKEVRSLVRDVKNGTVLFWCKVAGVRIDQSTLNRVIKRGVGNVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |