NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1115791

Scaffold Ga0209190_1115791


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1115791 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1212
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024548Metagenome / Metatranscriptome205Y
F065436Metagenome127Y
F075707Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_11157911F065436N/ARLYNAKLKLFGNSTTMKYKYTIKIHTVIDYAELERVMNDYGAKGYRVTKAEFISDTFESGRPMKKFVVYLEQKVK
Ga0209190_11157914F024548N/AMKSADNIVEVQESELKKYNKLKEGSKIEEGDLVNVYDNTYAELSKGSRVCKEVVNKYNTILRKK
Ga0209190_11157915F075707GAGGMTKLLLGLTILVLVYIVGWHQIYGQFIHSFYKKYELYLIWLSVPTTLSSIYATKLLAEYFNGKMWPNRIFTFSIG
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