Scaffold Ga0209190_1085366

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209190_1085366

Scaffold Ga0209190_1085366

Overview

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1085366 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1490
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F061661	Metagenome	131	Y
F103126	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10853664	F061661	AGGAG	MRYREHYTIQPTARKWADLALALAIGVGLAFFFFMGV
Ga0209190_10853665	F103126	GGAG	MSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWVAAEKLTSTKYKQRISEYQQEYDNLAQHCKQLELEIMELKR
Ga0209190_10853666	F006696	GGAG	MKFLKFLKNYYRDFTPSEVIQRELACAHLDRLEAEAAVEYAKAVLDMNMTRIERLNTRLGEYK

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