NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1046313

Scaffold Ga0209190_1046313


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1046313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F009125Metagenome322Y
F013396Metagenome271N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10463132F009125N/AMNSDNIRATLTAATPAAAMVTLSQVNEVAALVGTLLGIAFLLWRWRREAQKKD
Ga0209190_10463135F013396N/AVNLKRSLLLAVLALGLVVVLGLALRSERVLTAGLPLRIVAKTQEEARTLAGLGAVAVLGTGSMAPYIAAAPKGTDPLATVMAYVVTVQGATIADVRAGSLCIYVPEWAGRHVMHQAASFSDGGWIMTGLGTKTYENAERMTGRNFVGIVSRTYIWP
Ga0209190_10463136F005113GAGGMTKDEHKARIVQQLQQETINLLVEALASAQVDVEQLKAAAADKPSP
Ga0209190_10463137F003579N/AMTIQIAPYTMGSPAQPKVGTQFEVRYIQYTYPTAVADCHLLDADGVEIMPVGLVPATAEQCAAWTDDATFAGVLAVNAGFELVSEE
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