NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1046261

Scaffold Ga0209190_1046261


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1046261 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2231
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016936Metagenome / Metatranscriptome243Y
F024061Metagenome / Metatranscriptome207N
F029363Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10462612F029363AGGAMENDDDINGEDGSMDIHRELLFAAKDLRTMTSCKAEITISRRVTIKIGAIKPSWDYQITFGDILNRGAWRWECAQSDSLEGAMDITRAQITAQGDEKARELLQLTDAAAKLGLKLVEATA
Ga0209190_10462613F016936GGAGGMNLELIHAELVRIREALEARPYAAGAPAAKPAPSLAKSDEVPLPNEIIPNAGEVQVHFGKNKGVALSSLGERSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTAPVANMDEGDVSF
Ga0209190_10462615F024061GGGGGMNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVDDENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEDAK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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