NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1042011

Scaffold Ga0209190_1042011


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1042011 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2369
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032141Metagenome180Y
F041596Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10420113F041596AGGAMNKNTPATDGNIWDDVPPETPKKKTTEKALATPAAAVAPVINSPEYDIEGLMTDFPTATDLERFVFDETGVVLSLKGRANKLKYQVAMDVLNGQPVEPKYIGSGNPYLDKTDLVPEEPMKELPPRDPTIPAREDIQNEFFTAFVPHSDPEYHARGVKMHCTFRKYRNGCITYEVLGPIEPKPYGEKIDKFGRMRPEIIKWTDPRTGEQIVQRDDGTMTPVGRRLKAMMQTMKYNDSNQWIRYIDREFISLDQRAAQNPWDLTNDR
Ga0209190_10420114F032141AGGAMARISTKNMQAREINQKRGPTTGNENPGTKRATFVSEKASTGSEKSELANMITDAVAARGRGMQGFRDRTVEGLHTNTNVGRGPTRGNAAKPVKSAGGRRGALGATSGY
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