NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1037600

Scaffold Ga0209190_1037600


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1037600 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2542
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F027417Metagenome194Y
F083901Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_103760012F027417N/AMGYNYRVTFVTDYLTIITNVELELDDTTGNCSGEAYEQAAISGKNNIEDEIGKIDETIINDITVTLILDDEEIELEGEDE
Ga0209190_10376005F083901GGAGGMNQPTKSKSVLTYRTYRKARDRALIRLSHLYPDTYKQLLAIERKFDEKEGKDWTGIDGFANLSVGTHTRANRTPAFGDPADAGEDEGNYGGEA
Ga0209190_10376007F001477GGAGMSRILRFDSKGEPFLGDPPSNIYTIHPKKSPLILLYEVVDEEGIAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIVRAASL
Ga0209190_10376009F000821AGGAGGMNEEYLSAKANLCLNQAEKDLKENEIAKAIKNLERANSALYRLGLVKEGEADENN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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