NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1030361

Scaffold Ga0209190_1030361


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1030361 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2904
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F039478Metagenome / Metatranscriptome163Y
F071967Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10303612F039478N/AMLKKILEFIDGVFEEEKEQPVLGTLYKIKGEVLPFRYIRFTNEVYSNKPVYHFKHHQLKQYKFNDLSKVERKANNEEVRIYNLIKDHVNEVAENND
Ga0209190_10303616F071967N/AVSNQSEALAICSEFAEEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFIPKKRK
Ga0209190_10303618F017268N/AVNLDITALFNIILAALSFLGGWLFTRVFSLFDKQENLMKEINDKTFSDFITLRKEMEAEGRKHQQEISDLALKISTTYVTKESFDDYFDRIESKLDRNFDIIQEHLINKK
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