Scaffold Ga0209190_1023982

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209190_1023982

Scaffold Ga0209190_1023982

Overview

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1023982 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3369
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014736	Metagenome	260	Y
F020169	Metagenome	225	Y
F031870	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10239822	F031870	GAGG	MIDYTDYMVLPCGGVAYYDEPTHGMNYFCAQCECVVGSDAMPAKCKVEEAKWDLMKMLGGKGWDYFAEPDEYF
Ga0209190_10239825	F014736	GGAG	MNTPIVPDNVIKMWADPRFQLLADVDKLLNGSRVWAGMEWSYGYIHPHQYRPVAEKVRKALDELYKEYGVEE
Ga0209190_10239828	F020169	GAG	MSSTVRIDWGREFDNAQMWNEVCAWAIERYGLPGDRFQSHANVNYMEFVFKSDKDALMMSLMWNAPIISDNELTVEHIGRFMR

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