| Basic Information | |
|---|---|
| Taxon OID | 3300027736 Open in IMG/M |
| Scaffold ID | Ga0209190_1015080 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4460 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001259 | Metagenome / Metatranscriptome | 735 | Y |
| F077447 | Metagenome / Metatranscriptome | 117 | N |
| F088293 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209190_101508014 | F077447 | AGGA | VQVEVISDDVEIRIGEMKWMGVAYIRDGKPKVYVRTKAEFKAKFTPVIEQAP |
| Ga0209190_10150802 | F088293 | AGGAGG | VSVEQRILDLPAFADYNDRRQLRAIALDVRKLEDRVKQLEEENDAMRADLLLWREDKWRE |
| Ga0209190_10150804 | F001259 | AGGAGG | MRDCAFIYVHKSNGLVRVESLDTAKQIDGNPEWNHVATINPHVVLESILRATIKDRNLIIKHLLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |