NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1010620

Scaffold Ga0209190_1010620


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1010620 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5499
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F040067Metagenome / Metatranscriptome162Y
F061661Metagenome131Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10106201F040067N/AMLNLSSNGGSGNYIRFSPQANAWTNNNNVEITLKKVVFDIDHIKTGWLLLGVGVRDWVQDDSVGKKG
Ga0209190_10106206F061661AGGAGMRYREHYTIQPAIRKWADIALAVLIGIVMAFFLFMGA
Ga0209190_10106207F103126GGAGMSESMQTQIDEVVEELSPPLGSIGMLTTHDVQELVRRAATKGTLIGWVASERLTSTRYKQDYDNLAQHCKQLELEIMELKR
Ga0209190_10106209F006696GGAGMKILKFLKDYYRELTPAEVIQRELAQAHLDRLEAENAVEYAQAVLDLNMTRIERLKIRLGEYK
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