NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1009422

Scaffold Ga0209190_1009422


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1009422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5904
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y
F039993Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100942210F003304GGAMKQALVTQSFGEDWQKIIDLTRLRMEAYCKRHNTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLADQIKADDAKLVELGR
Ga0209190_100942211F021063GGAGVRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTGVPLNDALEYKNSHEVQKLLRDFKTGVITWWCKASGVQIDNRTLLRKIKENDYVLPT
Ga0209190_100942212F022371AGGAMFCLLDMAGVVWVVCWFVLYSWITLSAIFCALFIILKLIDYIKKELDL
Ga0209190_100942213F020665AGGAMRKRKAGKHIKLLKVEEYDAVKITVNVDDDLYEAMAEAGRQHVVKDKMACFEYALNQSLLELSKEIK
Ga0209190_10094229F039993N/AMKLALSWICYQIGDLISLTLMRFGYAYSIYNKMMIWSSALDEHSKIWKNVK

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