NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1005796

Scaffold Ga0209190_1005796


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1005796 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7844
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F019997Metagenome / Metatranscriptome226Y
F030064Metagenome186Y
F091303Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100579615F012098AGGMPKAHEIGPVFVQVTNFPYEWGSKFFVRGWTQEIDEPFRTATPFIVRLPRYKALVIGRWTGMKSEEEALNGALGRRDVTEDDFSEEAGWTPAPDSDREASSHNLYSRFNNMDGASDVYDWQAYHYVATQSESVGP
Ga0209190_10057964F091303GGAGGMSNKVPQLNRKSLSINPNRQTRKTEFVFNANLGYKSVAEPSIVSWANRGKGVQGETVNSQNVASKFVIRKAGKAL
Ga0209190_10057967F019997AGGAGMDINTLKSAGATWLRASLAACAALYMSGITDPKTLANAFVAGLLGPAAKFVNPKDPSYGFGKK
Ga0209190_10057968F030064N/AMTLGIVAGALISLGVLLSPLYKRIKRFMEWMERFMRDWEGEEASPGRDRVPGVMERLNSMDGELSQNGGSTTVKDRVDRLYENQGDVMNKQDILLEAFVEMGERLISIENCLNKSEVTATTPIV
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