NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1005413

Scaffold Ga0209190_1005413


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1005413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8172
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F017294Metagenome / Metatranscriptome241Y
F061661Metagenome131Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100541310F103126AGGAGMSEQMQMQIDEVVEELSPIPGQIGILTAHELRSHLRMAVTKGTLIGWAGAERLTSARYKQEYENLAQHCKQLELEIMELKR
Ga0209190_100541311F061661AGGAGMRYREHYTIQPVTRKWAEIALAVAIGLGLATLFFLGA
Ga0209190_100541312F017294AGGAGMSHQMHLNKGPTGMAARTACGRNILRTPMSTDWENFKMEAAAYRCIKCVSSKQFEVNTRMDARKAIN
Ga0209190_10054139F006696GGAGMKFLKFLKDYYRELTPTEVITRELSQAHLDRLEAEGAVEYAKAVLDLNLVRIERLNTRLKEYK
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