NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209190_1002739

Scaffold Ga0209190_1002739


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1002739 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11794
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F001460Metagenome / Metatranscriptome690Y
F001781Metagenome / Metatranscriptome635Y
F038669Metagenome / Metatranscriptome165Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100273911F001781GGAGMKPADKDKLNECLRILDTTDLGLSMVWLWTWSTIKSIMEDETYRANVSMDQMWDYLCEAVAAGQGFSLEYGADQHQEEVQDWMLSRDYIIDPMFEEDFDGEPNIVTGSRV
Ga0209190_100273913F038669GGAGGMREINDEFSPHLQKLVDMGESGTDIMHGHLKNLMLETETKLFSMGNNDLPDKFYNEGRMDALTECYILTYNLAFALNERIVRNG
Ga0209190_100273915F001460GGGGGMLGYTEEDLNRMINAVHDAKLFYLRTPSDLMDKAPLRKDLEDAVSFLQGLWAEGYFDYSTGI
Ga0209190_10027392F001280N/AMCYECGCGAFGSETGIIPANVIDVSRDGESGLTLDMTSTPEQTRRFINE
Ga0209190_100273921F071228AGGAMETPYGASVTPITPDTYNANALVQYKVIDGDSVTFPITKVADLEWELAQNRRITEIFNDLKNKVSRLEDLLVELYNPNYSKEEALEQIAELFEFELSKTVTVTGTIEFEVTVKVPLDEMENFDAHYKLGDELSLQTYGDDVEINTWSIQDTDVDWD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.